I tried opening the one you linked, it seems to have the same issues I see in VideoPad and when I export it. Then I tried opening my local file with a different video player (VLC rather than my default "Movies and TV" and I hear the same audio pops, so it seems like it might be how Microsoft is reading the file? I recorded the file via Microsofts Camera (usbc from HDMI) app.
Adding another layer to this onion, I tried using a screen capture program to record my screen of "Movies and TV" capturing the gameplay video to see if I could get around my problem that way and when I compared the videos "Movies and TV" is actually outputting the video faster than the other apps. I think the audio skipping is basically delaying the audio so the video catches up to it...