Hi
A separate audio track may have its problems. For example I filmed myself playing a violin piece with a piano accompaniment, but the piano part set up as a MIDI file and was playing through earphones via the PC. In some ways it was like a live performance but being driven by the MIDI piano part. (Filming and playing with the MIDI part through speakers didn't sound right.) The video obviously only recorded the violin part. Despite both the violin and MIDI having been played together, once on their separate tracks and with the start synchronised it was obvious that the MIDI recording was slightly different for some reason than the violin part and gradually got out of synch with the violin. It meant that I had to split the audio track where there were silences in the piano part, pulling the track back or forward a tiny amout to resynch it. Just for fun I added images of the sections of the music being played at the top of the screen .....couldn't make a karyoke ball dance along with the notes though. 
It's something similar that you may have to do. As you have two videos you shouldn't have to split or move the soundtrack.
At the points that you change camera angles (Video track 1 and Video track 2) by cutting out the overlay track sections to reveal the main track, you can easily (relatively anyway) resynch the main track by dragging a section of it along to the correct position.
It's pretty logical once you get going as you may have to chop the main track also to create a gap to move it left into. Fading in and out the overlay sections will also disguise any out of synch bits. It will work with care. I've done this with my local orchestra using two cameras.
Best of luck
Nat