Hi c_major
I've made many hundreds of red/cyan anaglyphs, mostly of old Victorian stereo cards which were black/white or sepia. and a lot of colour stereo pairs using digital cameras mounted side by side. As mentioned I have used Micrografx Picture Publisher to do this and VP to create what is in effect a slide presentation of the results.
The principle being to take both images, convert each to their three RBG channel images. For the left image I change the red channel to black and then recombine the channels. This gives the Cyan image (G+
.
For the right hand image I black out the green and blue channels and recombine to give the Red image.
Both images are then superimposed and merged by Addition.giving the final anaglyph for viewing. Here is an example...

Unfortunately the TINT effect you suggest doesn't work as it doesn't create a pure RED or CYAN channel.
But... I have now found that the COLOUR CURVES effect does work however.
...and its quick!
So now I have my two images (RED and CYAN) One on Video track 1 and the other on video track 2.
(When I say images I am testing with jpgs but analagous to video clips)
From what you are saying now is that ..I can't create an anglyph with these tracks until NCH develop a Merge by Addition function?
If you do develop this feature it might also be useful to develop a merge of designated tracks (1 and 2 say) by several modes e.g. Addition / Subtraction / Lighter / Darker / Filter / Multiply / Difference / Texturize which are the Mege modes available in the Micrografx package. They would produce some very useful effects for film makers.
(Micrografx was discontinued some years ago but I expect other packages have similar features.)
Anything on the horizon? 
Nat